Computations in Science Seminars
Oct 2025
8
Wed 12:15
Deborah Fygenson, University of California, Santa Barbara
Host: Arvind Murugan ()
Capturing kinks: metastable bent states and the animation of DNA nanotechnology

Like silicon for electronics, DNA is the revolution-enabling material for biotechnology. It is chemically stable, readily produced with high purity, and, when spiked with well-chosen defects, its predictable structure supports a range of devices. Also like silicon, the DNA-based devices of today are being engineered on the nanoscale, where technologically relevant material properties are often dominated by aspects that are negligible in bulk. As a prime example, short (~100 bp) dsDNA are able to cyclize much more readily than the well-studied stiffness of long (~10 kbp) dsDNA would seem to allow. Years of debate and study suggest kinking of the double helix is the explanation. We have built a DNA device that allows these such bent states to reconfigure a micron-scale structure, so that fluorescence videomicroscopy can reveal the bend angles and their stiffness. We find the kinked states are meta-stable, with intermediate states that require twisting. Prospects for using kinks as the conformational change that animates a DNA-machine will be discussed.

Oct 2025
15
Wed 12:15
Zoe Yan, University of Chicago
Host: Arvind Murugan ()
New opportunities in quantum simulation with ultrapolar molecules

Ultracold molecules are an emerging platform for quantum science that combines the techniques of atomic physics pioneered over the last half century, including quantum-state control and single particle detection/manipulation, with molecules' inherently rich internal structure.  I will present new efforts at UChicago toward building novel quantum phases of matter using the emerging technology of highly polar molecules cooled to nanokelvin temperatures. Specifically, we hope to realize exotic topological superfluids built from interacting gases of KAg molecules, which could feature extraordinary characteristics such as resistance to disorder, frictionless flow, and the emergence of Majorana particles. Another complementary goal is to leverage the strong dipole-dipole interactions to pioneer novel ways to load molecules into defect-free, low-entropy arrays for realizations of lattice spin models.

Oct 2025
22
Wed 12:15
Jeff Gore, Massachusetts Institute of Technology
Host: Arvind Murugan ()
Oct 2025
29
Wed 12:15
KC Huang, Stanford University
Host: Michael Rust ()
Nov 2025
5
Wed 12:15
Dmitry Krotov, MIT-IBM Watson AI Lab
Host: Suriyanarayanan Vaikuntanathan ()
Nov 2025
12
Wed 12:15
Sungyon Lee, University of Minneesota
Host: Sid Nagel ()
Nov 2025
19
Wed 12:15
Center for Living Systems Lecture

Replaced by Center for Living Systems student-organized special lecture.

Dec 2025
3
Wed 12:15
James Hanna, University of Nevada, Reno
Host: Tom Witten ()
Dec 2025
10
Wed 12:15
OPEN
Jan 2026
14
Wed 12:15
OPEN
Jan 2026
21
Wed 12:15
OPEN
Jan 2026
28
Wed 12:15
Jeffrey McMahon, University of Chicago
Host: Arvind Murugan ()
Feb 2026
4
Wed 12:15
Scott Coyle, University of Wisconsin, Madison
Host: Margaret Gardel ()
Feb 2026
11
Wed 12:15
Nikta Fakhri, Massachusetts Institute of Technology
Host: Peter Littlewood ()
Feb 2026
18
Wed 12:15
OPEN
Feb 2026
25
Wed 12:15
Jenny Sabin, Cornell University
Host: Heinrich Jaeger ()
Mar 2026
4
Wed 12:15
Justin Burton, Emory University
Host: Heinrich Jaeger ()
Mar 2026
11
Wed 12:15
Ila Fiete, Massachusetts Institute of Technology
Host: Suriyanarayanan Vaikuntanathan ()
Mar 2026
25
Wed 12:15
OPEN
Apr 2026
1
Wed 12:15
OPEN
Apr 2026
8
Wed 12:15
Boris Shraiman, University of California, Santa Barbara
Host: Arvind Murugan ()
Apr 2026
15
Wed 12:15
Center for Living Systems Lecture

Replaced by Center for Living Systems student-organized special lecture.

Apr 2026
22
Wed 12:15
Ned Wingreen, Princeton University
Host: D. Allan Drummond ()
Apr 2026
29
Wed 12:15
Sujit Datta, California Institute of Technology
Host: Arvind Murugan ()
May 2026
6
Wed 12:15
Center for Living Systems Lecture

Replaced by Center for Living Systems student-organized special lecture.

May 2026
13
Wed 12:15
OPEN
May 2026
20
Wed 12:15
OPEN